Can I quantify the number of mismatches post alignment?
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Field -Ye • 0
Last seen 2.1 years ago
Hong Kong

Dear MSA developer and folks´╝î I'd like to evaluate my error prone PCR results by NGS. I will need to align the results to the original sequence and quantify the mismatches. When I searched for R packages for alignment, I got MSA as the most popular result. I went through the manual but did not find the mismatch quantification function.

I wonder if MSA or any package could suit my application.

Thank you all. Field

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