quantifying exom reads featureCount
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@do-it-23093
Last seen 5 days ago
Germany, München

Hi everyone, Does anyone know where to download the human Annotating Genomes with GFF3 or GTF files or the function featureCount download it automatically in the command line. I did the unpaired end alignment using hg38 reference genome. My objective is to quantify read counts in the bam file using featureCounts.

featureCounts -t exon -g gene_id -a annotation.gtf -o counts.txt mapping_results_SE.bam

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ExomeSeq featureCount • 85 views
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Entering edit mode
adR ▴ 10
@do-it-23093
Last seen 5 days ago
Germany, München

I think its here https://www.ncbi.nlm.nih.gov/projects/genome/guide/human/index.shtml

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