I am currently struggling with my enrichGO results.
The results per se make sense and look great. However, when I looked into the GO terms I realized that there are not so many genes annotated with those GO terms in http://amigo.geneontology.org/ One example is neutrophil degranulation (GO:0043312) has 12 entries for homo sapiens on the geneontology website. The enrichGO analysis found that 204 of my significantly different genes are in this term.
I am very much puzzled by this huge discrepancy and cannot explain why this GO term seems to have way more entries in the org.Hs.eg.db.
Can anyone explain this?
Thanks for your help!!