Entering edit mode
I installed the latest R version 4.1.2, but I got problems with installing the latest bioconductor version 3.14. I can not install any package by bioconductor. Can anyone tell me the reason? THANKS!
> if (!requireNamespace("BiocManager", quietly = TRUE))
+ install.packages("BiocManager")
>
> BiocManager::install("DESeq2")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for
details
replacement repositories:
CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/
Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2021-11-01)
Installing package(s) 'BiocVersion'
Warning message:
In .inet_warning(msg) :
package 'BiocVersion' is not available for Bioconductor version '3.14'
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html
sessionInfo( )
R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.3 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=zh_CN.UTF-8 LC_NUMERIC=C LC_TIME=zh_CN.UTF-8
[4] LC_COLLATE=zh_CN.UTF-8 LC_MONETARY=zh_CN.UTF-8 LC_MESSAGES=zh_CN.UTF-8
[7] LC_PAPER=zh_CN.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
As Lori says, this was fixed yesterday.
What do you get from doing this:
Yes, it worked now. Thanks!