Correlating DNA methylation and Illumina gene expression microarray data
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@poojithastemcell-11859
Last seen 3.0 years ago
United Kingdom

I am trying to correlate the differentially methylated CpGs from HM450K with paired illumina gene expression micro array data. I came across the package COHCAP, which does a similar correlation for HM450K and RNA seq data. Would anyone know if I can use the same/ alternative package to suit gene expression micro array data?

Thank you.

Poojitha

microarray HM450 dna methylation cohcap • 956 views
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@james-w-macdonald-5106
Last seen 2 hours ago
United States

Section 2 of the COHCAP vignette starts with this line:

Beta values from the Human Methylation 450k array and expression values from the Affymetrix Human Gene 1.0 ST Array.

So I think it would be illustrative for you to read that.

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Thank you. That was helpful!

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