Question

Error in install package

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Entering edit mode

HAICAN • 0

@4457be8d

Last seen 2.3 years ago

United Kingdom

if (!requireNamespace("BiocManager", quietly = TRUE))
  install.packages("BiocManager")

BiocManager::install("clusterProfiler")

browseVignettes("clusterProfiler")


knitr::opts_chunk$set(tidy = FALSE,
                      warning = FALSE,
                      message = FALSE)

Error in unpackPkgZip(foundpkgs[okp, 2L], foundpkgs[okp, 1L], lib, libs_only,  : 
  ERROR: failed to lock directory ‘D:\Documents\R\win-library\4.0’ for modifying
Try removing ‘D:\Documents\R\win-library\4.0/00LOCK’
In addition: Warning message:
package(s) not installed when version(s) same as current; use `force = TRUE` to re-install:
  'clusterProfiler' 

sessioninfo results--
R version 4.0.3 (2020-10-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 14393)

Matrix products: default

locale:
[1] LC_COLLATE=Chinese (Simplified)_China.936  LC_CTYPE=Chinese (Simplified)_China.936   
[3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C                              
[5] LC_TIME=Chinese (Simplified)_China.936    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] BiocManager_1.30.16 compiler_4.0.3      tools_4.0.3         knitr_1.30         
[5] xfun_0.24

clusterProfiler • 1.9k views

ADD COMMENT • link updated 2.3 years ago by shepherl 3.8k • written 2.3 years ago by HAICAN • 0

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Entering edit mode

Did you try following the advice given

Error in unpackPkgZip(foundpkgs[okp, 2L], foundpkgs[okp, 1L], lib, libs_only,  : 
  ERROR: failed to lock directory ‘D:\Documents\R\win-library\4.0’ for modifying
Try removing ‘D:\Documents\R\win-library\4.0/00LOCK’

Also since you have already installed clusterProfiler you do not need to do BiocManager::install("clusterProfiler"). That call only needs to be done once on a system and subsequently you can just do library('clusterProfiler').

Do you get errors if you just run:

library('clusterProfiler')
browseVignettes("clusterProfiler")

ADD REPLY • link 2.3 years ago shepherl 3.8k