MATRIXEQTL: Error during load SNPMATRIX.txt in MATRIXEQTL
1
0
Entering edit mode
Neha • 0
@3fa075d2
Last seen 3 months ago
Finland

library(MatrixEQTL)

useModel = modelLINEAR

SNP_file_name = paste("/Users/user1/Desktop/Plant_1/eqtl/209_40.txt", sep = "")

expression_file_name = paste( "/Users/user1/Desktop/Plant_1/eqtl/Gene_expression.txt.", sep = "")

covariates_file_name to character() Error: unexpected symbol in "covariates_file_name to" covariates_file_name = character()

output_file_name = tempfile()

pvOutputThreshold = 1e-2

errorCovariance = numeric()

snps = SlicedData$new()

snps$fileDelimiter = "\t"

snps$fileOmitCharacters = "NA"

snps$fileSkipRows = 1

snps$fileSkipColumns = 1

snps$fileSliceSize = 2000

snps$LoadFile( SNP_file_name )

Error: Error in dim(data) = c(length(rowvals[[1]]), length(rowvals)) : dims [product 48375] do not match the length of object [48362]

MatrixEQTL • 108 views
ADD COMMENT
0
Entering edit mode
@mikelove
Last seen 1 day ago
United States

This is not a Bioconductor package.

You can try to find the maintainer by typing in R: maintainer("MatrixEQTL")

ADD COMMENT

Login before adding your answer.

Traffic: 547 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6