ChIP-seq or CUT&RUN enrichment
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Bogdan ▴ 670
@bogdan-2367
Last seen 5 months ago
Palo Alto, CA, USA

Dear all,

would you please let me know which BioC packages would you recommend for computing the enrichment in ChIP-seq or CUT-RUN experiments in order to show that the quality of the peaks in one experiment 1 is much better than the quality/intensity of the peaks in another experiment 2 ? (BioC packages beside ChIPQC and SPP). Thanks,

~ Bogdan

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ChIPQC ChIPpeakAnno • 844 views
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Have you tried phantompeakqualtools?

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Not directly. I have inspected the PhantomPeak that was provided by ChIPQC.

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