GOexpress pvalue and gene sets
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jms2520 ▴ 10
@3184ac53
Last seen 12 months ago
United States

I am using GOexpress for the first time and I would like to print out some of the genes that are in go_id that fall below the top 5. For example

CC.20 <- subset_scores(result = All_Cerebellum_results.pVal,
                       namespace = "cellular_component",
                       total=20,
                       p.val=0.05)
head(CC.20$GO)

There are many more GO groups that are significant that I would like to access gene lists for.

Additionally is there a way to print out more decimal places for the pvalue? Many of them just say "0"

Thanks!

GOexpress • 438 views
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