I'm currently trying to perform differential gene expression analysis on Affymetrix microarray data. I'm planning on using the limma package from Bioconductor but it is not working!
I've spent the last two days trying to find a workaround for this. I've updated my R (4.1.2) and have deleted and reinstalled multiple times. I have also deleted the Bioconductor package and reinstalled but this has not worked. I'm using a MacBook Pro M1 (2021).
I have no clue how to properly format a question on here so sorry if it doesn't make sense. But this is the code I have put in and the output that I am getting.
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2021-11-01) Installing package(s) 'limma' Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘limma’ Do you want to attempt to install these from sources? (Yes/no/cancel)
Please could someone help! Would be eternally grateful. Thanks :)