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@91082a7a
Last seen 2.1 years ago
Iran

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Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )


#3: correlation heatmap (+hierarchical clustering)

cor_raw<-cor(log_raw_ex)
library(pheatmap)
library(ggplot2)
group2<-c (paste0("collagen",1:2) ,paste0("collagen and cisplatin",1:2),paste0("non",
 "non",1:4))
group2
pheatmap(cor_raw ,
         cellwidth=20,
         cellheight=20,
         labels_row=group2,
         labels_col=group2,
         color="blue2","yellow","burlywood3", 
         clustering_distance_cols ="binary",
         clustering_distance_rows ="binary")

error Error in sample.int(m, k) : vector size cannot be NA/NaN In addition: Warning message: In sample.int(m, k) : NAs introduced by coercion

plasFIA • 570 views
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Please guide

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@james-w-macdonald-5106
Last seen 15 hours ago
United States

The pheatmap function is meant for numeric data, but you are providing character data. What sort of heatmap do you expect to get from character data?

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