Can we get an Average Profile of ChIP peaks binding to Transcription "START and STOP site" both in a single plot?
Entering edit mode
Swadha • 0
Last seen 19 months ago
United States

Hi, I am trying to use "plotAvgProf". Is it possible to generate the same plot that shows peak bindings with respect to transcription START SITE and STOP SITE both?

This is the current command I am using:

plotAvgProf2(peak1[], TxDb=txdb, upstream=3000, downstream=3000,
               xlab="Genomic Region (5'->3')", ylab = "Read Count Frequency", resample = 1000)

Thanks -S

# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )
ChIPSeq ChIPseeker • 557 views

Login before adding your answer.

Traffic: 705 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6