DESeq2 installation Error (ERROR: dependency ‘locfit’ is not available for package ‘DESeq2’)
1
0
Entering edit mode
tsomakiank • 0
@93aec3aa
Last seen 2 days ago
Greece

Hello everybody! I am trying to install DESeq2 and I keep getting errors. At first I had about 10 errors regarding packages I couldnt install. The main problem of that was that I couldnt install RCurl. From searching I managed to install RCurl but I still get the bellow error.

> install('DESeq2', lib = '/home/kostas/R/x86_64-pc-linux-gnu-library/3.6')
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.10 (BiocManager 1.30.17), R 3.6.3 (2020-02-29)
Installing package(s) 'DESeq2'
Warning: dependency ‘locfit’ is not available
trying URL 'https://bioconductor.org/packages/3.10/bioc/src/contrib/DESeq2_1.26.0.tar.gz'
Content type 'application/x-gzip' length 2060061 bytes (2.0 MB)
==================================================
downloaded 2.0 MB

ERROR: dependency ‘locfit’ is not available for package ‘DESeq2’
* removing ‘/home/kostas/R/x86_64-pc-linux-gnu-library/3.6/DESeq2’

The downloaded source packages are in
    ‘/tmp/RtmpvImMFF/downloaded_packages’
Warning message:
In install.packages(...) :
  installation of package ‘DESeq2’ had non-zero exit status
DESeq2 • 374 views
ADD COMMENT
0
Entering edit mode
@mikelove
Last seen 5 hours ago
United States

Use Bioc installation steps: https://bioconductor.org/install

ADD COMMENT

Login before adding your answer.

Traffic: 319 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6