RNA-Informed Variant Effect on Regulation input format
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@e7de23a9
Last seen 22 months ago
Russia

Hi everyone!

Im trying to deal with rare variants for the first time and I need to use RIVER (RNA-Informed Variant Effect on Regulation) package. I completely don't understand how to create correct input file. I can use data from dbGAP. Maybe someone can share experience of using RIVER (creating input)? As I undersood, I should create matrix with features, N2 pairs and Z-scores. Which raw file format I need? How N2 pairs can be calculated? Any recomendation will be really helpfull.

rarevariants RIVER • 339 views
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