Problem fixing the groHMM compilation error
1
0
Entering edit mode
@anushanagari-8496
Last seen 17 days ago
UT SOUTHWESTERN MEDICAL CENTER

Hello,

I made the changes to overcome the S.h related error during the compilation of groHMM on R 4.2.0 and pushed the changes to git repo (without any errors). I even cloned the repo to confirm that the changes were pushed.

However, it still shows the same error: https://master.bioconductor.org/checkResults/3.15/bioc-LATEST/groHMM/nebbiolo1-buildsrc.html

DecayAlgorithm.c:33:10: fatal error: S.h: No such file or directory
33 | #include <S.h>

The package still has compilation issues even though #include <S.h> is removed. Could you please help in addressing this issue.

groHMM • 60 views
ADD COMMENT
0
Entering edit mode
Mike Smith ★ 5.6k
@mike-smith
Last seen 1 day ago
EMBL Heidelberg / de.NBI

Please note that this support site is indented for package users to ask questions about how to use specific packages or carry out analyses. You question is more about package development & maintenance, and would be better directed to the developers mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel) or the Bioconductor slack (https://bioc-community.herokuapp.com/).

You can see in https://code.bioconductor.org/browse/groHMM/commits/master that your commits have indeed be entered into the Bioconductor git repository. However you've only added them to the master branch, which maps to the developmental version of Bioconductor (currently version 3.16). You'll need to also push your changes to the RELEASE_3_15 branch for them to be reflected in the release version of the package. You can see that's currently not the case at https://code.bioconductor.org/browse/groHMM/commits/RELEASE_3_15

ADD COMMENT

Login before adding your answer.

Traffic: 147 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6