error installing phyloseq
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Ezra • 0
@109a8fc1
Last seen 14 days ago
Israel

Hi

I am getting an error when trying to install phyloseq. everything seems fine until the end, then i get this error:


# BiocManager::install("phyloseq")
Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) : 
  cannot open the connection
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 3067904 != reported length 3071450
2: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 737280 != reported length 757100
3: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 1568768 != reported length 1572141
4: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 1691648 != reported length 1718163
5: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 5443584 != reported length 5448802
6: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 3887104 != reported length 3892679
7: In unzip(zipname, exdir = dest) : error 1 in extracting from zip file
8: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
  cannot open compressed file 'RCurl/DESCRIPTION', probable reason 'No such file or directory'
# > sessionInfo()
R version 4.1.3 (2022-03-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)

Matrix products: default

locale:
[1] LC_COLLATE=Hebrew_Israel.1255  LC_CTYPE=Hebrew_Israel.1255    LC_MONETARY=Hebrew_Israel.1255
[4] LC_NUMERIC=C                   LC_TIME=Hebrew_Israel.1255    
system code page: 1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocManager_1.30.18

loaded via a namespace (and not attached):
[1] compiler_4.1.3 tools_4.1.3   

sessionInfo( )

I tried running r as admin, did not help your suggestions are welcome, thanks dr. ezra

phyloseq • 65 views
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Is there more before this error? Can you include the complete output? Also perhaps a traceback()

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