Hi all, I am looking for a tool similar to iRegulon from Cytoscape.
Basically, I would like to input a list of genes and get a plot where master regulators of that list are highlighted. The tool would have to crreate a network, calculate binding motifs, predict regulators and targets, in the genes of interest. In particular, I am looking to understand how a single transcription factor (TF) of my interest is regulating any/some of the genes of the list, so it would be useful if that could be specified, but also how other master regulators are involved and get a plot where this could be understood.
This is a plot produced with iRegulon and this more or less what I am looking for:
Thank you in advance for your help!!