I got error message about DESeqDataSetFromMatrix
1
0
Entering edit mode
@5e002df5
Last seen 10 days ago
Japan

Enter the body of text here

Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output
# please also include the results of running the following in an R session

sessionInfo( )


dds <- DESeqDataSetFromMatrix(countData=countdata, colData=coldata, design=~condition)

Error in DESeqDataSetFromMatrix(countData = countdata, colData = coldata, : could not find function "DESeqDataSetFromMatrix"

DESeq2 • 198 views
0
Entering edit mode
swbarnes2 ★ 1.1k
@swbarnes2-14086
Last seen 11 hours ago
San Diego

Did you do

library(DESeq2)

first? That's the error you get when the software has no idea what function you are referring to, because you haven't told it to load a library of functions.

0
Entering edit mode

Yes , I did.

0
Entering edit mode

I run the library(DESeq2) then got error message. I am new in r. How to solve this error. Error: package or namespace load failed for ‘DESeq2’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘locfit’

0
Entering edit mode

Well, what do you think the error means based on what it says?