FeaturePlot in scater
Last seen 11 months ago
Hi, I am reading the OSCA book, which is a wonderful book.
I have seen the
plotExpression function in OSCA. I am wondering whether there is a function like Seurat
FeaturePlot can plot the gene expression on the UMAP or T-SNE plot like
Last seen 28 days ago
Something like this?
example_sce <- mockSCE()
example_sce <- logNormCounts(example_sce)
example_sce <- runTSNE(example_sce)
plotReducedDim(example_sce, "TSNE", colour_by="Gene_0001")
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