FeaturePlot in scater
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@shangguandong1996-21805
Last seen 5 days ago
China

Hi, I am reading the OSCA book, which is a wonderful book.

I have seen the plotExpression function in OSCA. I am wondering whether there is a function like Seurat FeaturePlot can plot the gene expression on the UMAP or T-SNE plot like enter image description here

Best wishes

Guandong Shang

scater OSCA • 130 views
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@alanocallaghan-14291
Last seen 9 days ago
United Kingdom

Something like this?

library("scater")

example_sce <- mockSCE()
example_sce <- logNormCounts(example_sce)

example_sce <- runTSNE(example_sce)
plotReducedDim(example_sce, "TSNE", colour_by="Gene_0001")

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Thanks, this is what I want!

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