Calculating tumour purity having only CNA data
0
0
Entering edit mode
JAcky • 0
@d6b8183e
Last seen 1 day ago
Israel

I downloaded clinical data from cBioPortal in addition to some more files. Among the downloaded files is a seg file of copy number alteration (CNA). Since no transcriptomic data is available, I aim to calculate tumor purity using CNA data, with the PureCN R package. The guide provided at https://bioconductor.org/packages/release/bioc/vignettes/PureCN/inst/doc/PureCN.pdf mentions an interval.file and a vcf.file

Is it possible to calculate the tumour purity using only CNA? if so, how?

EDIT: You can close this question.

PureCN CNA purity cancer • 69 views
ADD COMMENT

Login before adding your answer.

Traffic: 191 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6