Error message: Could not find function "DESeqDataSetFromMatrix"
1
0
Entering edit mode
@5e002df5
Last seen 19 months ago
Japan

Enter the body of text here

Code should be placed in three backticks as shown below


# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )

Error in DESeqDataSetFromMatrix(countData = countdata, colData = coldata, : could not find function "DESeqDataSetFromMatrix"

DESeq2 • 4.6k views
ADD COMMENT
1
Entering edit mode
@james-w-macdonald-5106
Last seen 3 hours ago
United States

Any time you see an error that ends with

could not find function "<function name goes here>"

it means that you haven't loaded the package that contains that function yet. So start with library(DESeq2) and it will then work.

ADD COMMENT
0
Entering edit mode

After run the library(DESeq2). Error: package or namespace load failed for ‘DESeq2’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called ‘locfit’

ADD REPLY
0
Entering edit mode

Install locfit.

ADD REPLY
0
Entering edit mode

when install.packages("locfit")

Warning in install.packages : package ‘locfit’ is not available (for R version 3.6.3)

ADD REPLY

Login before adding your answer.

Traffic: 747 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6