DESeq2 likehood ratio
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@selorbany-23543
Last seen 4 days ago
United Kingdom

I hope you can answer my previous question.

Further to my previous question, Can we do pair-wise comparison on a DEseq2 object from likelihood ratio, considering that it is similar to ANOVA?.

i.e

dds_LRT <- DESeq(ddsobj, test="LRT", reduced = ~ 1)

then

use this object to do pairwise comparisons for the 8 levels of the factor

res_LRT <- results(dds_LRT, lfcThreshold = 0, contrasts = c('B-control', 'A-control'))

Thanks

DESeq2 • 105 views
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@mikelove
Last seen 8 hours ago
United States

Let's keep the questions together:

original thread is DESeq2 likehood ratio

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