Converting from TAIR 8 to TAIR11
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Joshua Banta ▴ 30
@joshua-banta-6311
Last seen 10 weeks ago
United States

Dear listserv,

I was hoping you could help me convert coordinates from TAIR8 to the most recent TAIR (is the most recent TAIR10?).

For instance, I have this TAIR8 location: 18943964 on Chromosome 1.

Is there a way in Bioconductor to convert it to the location according to the most recent TAIR?

Please forgive me for not having any code to begin with. I don't know where to start.

Thanks very much!


JOSHUA A. BANTA, PH.D. Professor of Biology Director, Center for Environment, Biodiversity, and Conservation W: 903-565-5655 | jbanta@uttyler.edu | plantevolutionaryecology.org The University of Texas at Tyler | 3900 University Blvd. Tyler, Texas 75799

org.At.tair.db • 104 views
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@shangguandong1996-21805
Last seen 4 weeks ago
China

you can use https://www.arabidopsis.org/download/index-auto.jsp?dir=%2Fdownload_files%2FSoftware%2FUpdateCoord

to convert TAIR8 to TAIR9. And the TAIR9 coord is same as TAIR10.

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