I am trying to plot genome coverage over the Arabidopsis thaliana genome using "karyoploteR". I tried to use BSgenome package to get the genome. The BSgenome package has TAIR9 genome which is old ( "BSgenome.Athaliana.TAIR.TAIR9"). I found that TAIR10.1 is available at https://bioconductor.statistik.tu-dortmund.de/packages/3.12/data/annotation/html/BSgenome.Athaliana.TAIR.TAIR10.1.html and tried to install
But I gets an error message when I tried to install.
# The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("BSgenome.Athaliana.TAIR.TAIR10.1")
Warning message: package 'BSgenome.Athaliana.TAIR.TAIR10.1' is not available for Bioconductor version '3.12' A version of this package for your version of R might be available elsewhere
Feedback is greatly appreciated.