Issue with installation of a package.
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@f66c10f0
Last seen 8 weeks ago
South Africa

Good day

I am struggling to install a package. I have been trying for days. I am not great with programming I am trying to use Phenoflow in R and a required package is flowFDA.

Please see the command and the error below

BiocManager::install("flowFDA")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23 ucrt)
Installing package(s) 'flowFDA'
Old packages: 'foreign', 'nnet'
Update all/some/none? [a/s/n]: 
a
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/foreign_0.8-83.zip'
Content type 'application/zip' length 277838 bytes (271 KB)
downloaded 271 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.2/nnet_7.3-18.zip'
Content type 'application/zip' length 122410 bytes (119 KB)
downloaded 119 KB

package ‘foreign’ successfully unpacked and MD5 sums checked
package ‘nnet’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Users\Kinosha\AppData\Local\Temp\RtmpuIMGks\downloaded_packages
Warning message:
package ‘flowFDA’ is not available for Bioconductor version '3.15'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

Any help is appreciated.

Thank you in advance

RStudio flowFDA • 137 views
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Basti ▴ 470
@7d45153c
Last seen 4 hours ago
France

flowFDA is not a bioconductor package, please follow Github page guidelines for installation : https://github.com/statOmics/flowFDA Pay attention that it does not seem to be maintained since 2016 and the biocLite command to install dependencies should be replaced by BiocManager::install().

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