Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
1
0
Entering edit mode
Catherine • 0
@eb5bf7c8
Last seen 18 months ago
United States

This is where the installation failed. I tried installing DESeq2 on "R Studio Cloud" and it worked. I am assuming this is a mac issue.

If anyone knows what to do I would very much appreciate it! Very new to R so anything will help.


make: /opt/R/arm64/bin/gfortran: No such file or directory
make: *** [ttest.o] Error 1
ERROR: compilation failed for package ‘genefilter’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/genefilter’
Warning: installation of package ‘genefilter’ had non-zero exit statusERROR: dependency ‘genefilter’ is not available for package ‘DESeq2’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/DESeq2’
Warning: installation of package ‘DESeq2’ had non-zero exit status
The downloaded source packages are in
    ‘/private/var/folders/m8/yy1nt9zx0ml8cdfw89vh42lc0000gn/T/RtmpsB8dBM/downloaded_packages’
DESeq2 Install r • 1.6k views
ADD COMMENT
0
Entering edit mode
ATpoint ★ 4.0k
@atpoint-13662
Last seen 7 hours ago
Germany

Please read the error message and google or use the search function. Asked many times before (gfortran, ARM Macs) cannot install edgeR on M1 Mac

From Bioc 3.16 on Bioconductor provides binaries for the new ARM Macbooks so an upgrade if Bioconductor might be easiest.

ADD COMMENT
0
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 611 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6