ERROR IN INSTALLATION PACKAGE IN R
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Chanchal • 0
@179afcc1
Last seen 17 months ago
India

I need to install partialAR package in R but i am unable to install it shown the error message

THE FOLLOWING IS THE R CODE I PUT

Downloading GitHub repo matthewclegg/partialAR@HEAD
✔  checking for file 'C:\Users\hemant\AppData\Local\Temp\RtmpKG8NNY\remotes20cc5145622b\matthewclegg-partialAR-ab8b670/DESCRIPTION' (1.9s)
─  preparing 'partialAR':
✔  checking DESCRIPTION meta-information ... 
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  building 'partialAR_1.0.12.tar.gz'

Installing package into ‘C:/Users/hemant/AppData/Local/R/win-library/4.2’
(as ‘lib’ is unspecified)
* installing *source* package 'partialAR' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"C:/PROGRA~1/R/R-42~1.2/include" -DNDEBUG  -I'C:/Users/hemant/AppData/Local/R/win-library/4.2/Rcpp/include'   -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11  -I"C:/PROGRA~1/R/R-42~1.2/include" -DNDEBUG  -I'C:/Users/hemant/AppData/Local/R/win-library/4.2/Rcpp/include'   -I"C:/RBuildTools/4.2/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cfit.cc -o cfit.o
cfit.cc: In function 'double loglik_par_c(Rcpp::NumericVector, double, double, double, double, double)':
cfit.cc:171:41: error: 'PI' was not declared in this scope
  171 |     double nll = (n/2.0)*log(tvar * 2.0*PI) + esumsq/(2.0*tvar);
      |                                         ^~
cfit.cc: In function 'double loglik_par_t_c(Rcpp::NumericVector, double, double, double, double, double, double)':
cfit.cc:202:66: error: 'PI' was not declared in this scope
  202 |     double const_term = n * (lgamma((nu+1.0)*0.5) - 0.5*log(nu * PI) -
      |                                                                  ^~
make: *** [C:/PROGRA~1/R/R-42~1.2/etc/x64/Makeconf:258: cfit.o] Error 1
ERROR: compilation failed for package 'partialAR'
* removing 'C:/Users/hemant/AppData/Local/R/win-library/4.2/partialAR'
Warning message:
In i.p(...) :
  installation of package ‘C:/Users/hemant/AppData/Local/Temp/RtmpKG8NNY/file20cc5a3ca96/partialAR_1.0.12.tar.gz’ had non-zero exit status
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@james-w-macdonald-5106
Last seen 30 minutes ago
United States

This support site is intended to help people with questions about Bioconductor packages. The partialAR package isn't even an CRAN package any longer, having been demoted due to not passing R CMD check. Which means it wasn't compiling at that time, and there are no updates to indicate that the problem has been fixed.

Anyway, your best recourse is to contact the maintainer directly and see if you can get help there.

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