Empty ChipQC Report
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@fce3b503
Last seen 4 days ago
United States

I've successfully run ChipQC on my samples and all plots generated. The report is empty though. A file is created called 'ChiP QC report' except nothing is in it.

My code is:

E2F7 = ChIPQC(E2F_sampleSheet, annotation = "hg19")
ChIPQCreport(E2F7, reportName="ChIP QC report: E2F7 and E2F8", reportFolder="ChIPQCreport")

sessionInfo():
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22621)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.utf8  LC_CTYPE=English_United States.utf8    LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                           LC_TIME=English_United States.utf8    

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods   base    

other attached packages:
 [1] XLConnect_1.0.6             ChIPseeker_1.32.1           forcats_0.5.2               stringr_1.4.1              
 [5] dplyr_1.0.10                purrr_0.3.5                 readr_2.1.3                 tidyr_1.2.1                
 [9] tibble_3.1.8                tidyverse_1.3.2             ChIPQC_1.32.2               BiocParallel_1.30.4        
[13] DiffBind_3.6.5              SummarizedExperiment_1.26.1 Biobase_2.56.0              MatrixGenerics_1.8.1       
[17] matrixStats_0.62.0          GenomicRanges_1.48.0        GenomeInfoDb_1.32.4         IRanges_2.30.1             
[21] S4Vectors_0.34.0            BiocGenerics_0.42.0         ggplot2_3.4.0

any ideas on why the report is empty?

Thanks in advance.

ChipQCReport • 83 views
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Hi, I have the same issue. Have you found any solution or any reason why this is happening?

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