Question: ALL Library and ALL Data Set error
gravatar for alyssa.ylescu
2.2 years ago by
alyssa.ylescu0 wrote:

I am trying to access the ALL library and ALL data set. When I enter the following commands, I run into errors. How do I resolve this? 

​> source("")
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
> biocLite("ALL")
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.3.2 (2016-10-31).
Installing package(s) ‘ALL’
installing the source package ‘ALL’

trying URL ''
Content type 'application/x-gzip' length 11401988 bytes (10.9 MB)
downloaded 10.9 MB

'D:\Program' is not recognized as an internal or external command,
operable program or batch file.

The downloaded source packages are in
Warning messages:
1: running command '"D:/Program Files/R/R-3.3.2/bin/x64/R" CMD INSTALL -l "D:\Program Files\R\R-3.3.2\library" C:\Users\alyss\AppData\Local\Temp\RtmpOIwH4i/downloaded_packages/ALL_1.16.0.tar.gz' had status 1
2: In install.packages(pkgs = doing, lib = lib, ...) :
  installation of package ‘ALL’ had non-zero exit status
ADD COMMENTlink written 2.2 years ago by alyssa.ylescu0

What does the command

strsplit(Sys.getenv("PATH"), ";")

print? Does

install.packages("ALL", repos=BiocInstaller::biocinstallRepos())

work? What is the result of

ADD REPLYlink written 2.2 years ago by Martin Morgan ♦♦ 23k
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