TCGA RNAseq Normalization
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Deniz • 0
@dff99c1d
Last seen 5 weeks ago
United States

Hi,

I have been trying to use TCGA RNA-seq data for pancreatic cancer and compare it with our own RNAseq data. I was wondering what is the best optimal way to normalize all the counts. Thank you so much!

normalization RNASEQ Normalization TCGAutils TCGA • 101 views
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It's regular RNA-seq, any of the standard methods in edgeR or DESeq2 will probably do. Please check their manuals on normalization.

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