Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
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lhaiyan3 • 0
@lhaiyan3-15571
Last seen 15 months ago
United States

Hi,

We have two samples are PacBio Iso-seq libraries so they are long read transcriptomes. The two samples are from the same cell line with the only difference being the parental line (WT) and knock down of a particular gene (KD). The question is: Does the knock down cause transcriptome-wide differences in isoform usage?

We have the SQANTI3 output from the facility. Can anyone please give me some suggestions how to answer the question? Thanks.

Haiyan

pacbio isoform • 529 views
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ATpoint ★ 3.9k
@atpoint-13662
Last seen 13 hours ago
Germany

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