normFactors or calcNormFactors (computing the normalization or scaling factors)
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Bogdan ▴ 670
@bogdan-2367
Last seen 6 months ago
Palo Alto, CA, USA

Dear all,

I am working on normalization of ChIP data function of syntethtical spike-ins. Would someone let me know how these functions :

edgeR::calcNormFactors

csaw::normFactors

computeSpikeFactors (http://bioconductor.org/books/3.14/OSCA.basic/normalization.html

are statistically formulated, and what are the differences between them ? Thanks a lot !

~ Bogdan

limma edgeR csaw • 446 views
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