Problems running WGCNA
0
0
Entering edit mode
S • 0
@0b4d0d5b
Last seen 5 months ago
Norway

Hi,

I am trying to run WGCNA on R studio using R version 4.2.2. I was wondering if somebody can help debug it.

Thanks again.

Code should be placed in three backticks as shown below

library(WGCNA)
Error: package or namespace load failed for ‘WGCNA’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/preprocessCore/libs/preprocessCore.so':
  dlopen(/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/preprocessCore/libs/preprocessCore.so, 0x0006): Library not loaded: '/opt/R/arm64/gfortran/lib/libquadmath.0.dylib'
  Referenced from: '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/preprocessCore/libs/preprocessCore.so'
  Reason: tried: '/opt/R/arm64/gfortran/lib/libquadmath.0.dylib' (no such file), '/usr/local/lib/libquadmath.0.dylib' (no such file), '/usr/lib/libquadmath.0.dylib' (no such file)
# include your problematic code here with any corresponding output 
# please also include the results of running the following in an R session 

sessionInfo( )
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6

Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] fastcluster_1.2.3     dynamicTreeCut_1.63-1

loaded via a namespace (and not attached):
 [1] Biobase_2.58.0         httr_1.4.4             bit64_4.0.5           
 [4] splines_4.2.2          foreach_1.5.2          Formula_1.2-4         
 [7] assertthat_0.2.1       stats4_4.2.2           latticeExtra_0.6-30   
[10] blob_1.2.3             GenomeInfoDbData_1.2.9 impute_1.72.1         
[13] pillar_1.8.1           RSQLite_2.2.19         backports_1.4.1       
[16] lattice_0.20-45        glue_1.6.2             digest_0.6.31         
[19] RColorBrewer_1.1-3     XVector_0.38.0         checkmate_2.1.0       
[22] colorspace_2.0-3       htmltools_0.5.4        Matrix_1.5-1          
[25] pkgconfig_2.0.3        zlibbioc_1.44.0        GO.db_3.16.0          
[28] scales_1.2.1           jpeg_0.1-10            tibble_3.1.8          
[31] htmlTable_2.4.1        KEGGREST_1.38.0        generics_0.1.3        
[34] IRanges_2.32.0         ggplot2_3.4.0          cachem_1.0.6          
[37] nnet_7.3-18            BiocGenerics_0.44.0    cli_3.4.1             
[40] survival_3.4-0         magrittr_2.0.3         crayon_1.5.2          
[43] deldir_1.0-6           memoise_2.0.1          fansi_1.0.3           
[46] doParallel_1.0.17      foreign_0.8-83         data.table_1.14.6     
[49] tools_4.2.2            lifecycle_1.0.3        matrixStats_0.63.0    
[52] stringr_1.5.0          interp_1.1-3           S4Vectors_0.36.1      
[55] munsell_0.5.0          cluster_2.1.4          AnnotationDbi_1.60.0  
[58] Biostrings_2.66.0      compiler_4.2.2         GenomeInfoDb_1.34.4   
[61] rlang_1.0.6            grid_4.2.2             RCurl_1.98-1.9        
[64] iterators_1.0.14       rstudioapi_0.14        htmlwidgets_1.6.0 
[67] bitops_1.0-7           base64enc_0.1-3        gtable_0.3.1          
[70] codetools_0.2-18       DBI_1.1.3              R6_2.5.1              
[73] gridExtra_2.3          knitr_1.41             dplyr_1.0.10          
[76] fastmap_1.1.0          bit_4.0.5              utf8_1.2.2            
[79] Hmisc_4.7-2            stringi_1.7.8          parallel_4.2.2        
[82] Rcpp_1.0.9             vctrs_0.5.1            rpart_4.1.19          
[85] png_0.1-8              tidyselect_1.2.0       xfun_0.35
WGCNA • 587 views
ADD COMMENT

Login before adding your answer.

Traffic: 683 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6