Hi,
I have gene expression matrix downloaded from DepMap data portal (e.g. OmicsExpressionGenesExpectedCountProfile.csv). Basically, it is a data matrix with values generated from RSEM. Row IDs are gene names and column IDs are samples (cell lines). The values are floating type, not integer. I wonder if there is a way to use DESeq2 to perform differential gene expression analysis?
Thanks,
Jason
Hi Gordon and Michael, thanks for your quick replies.