GRanges list convert into igraph format
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Bogdan ▴ 660
@bogdan-2367
Last seen 1 day ago
Palo Alto, CA, USA

Dear all,

I do have a set of translocations in GRanges List format. Is there a way to convert a GRanges List into an Adjacency List or Adjacency MAtrix that I could use as input into igraph package ? Thank a lot,

Bogdan

ps : igraph package accepts these formats : https://dshizuka.github.io/networkanalysis/02_dataformats.html

GRanges igraph • 90 views
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I am not sure how would an adjacency matrix of a GRangesList look like. Could you provide a made up example? I think you could create an incidence matrix and transform it to an adjacency matrix to use it as input for igraph.

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