I am trying to build https://github.com/LTLA/InteractionSet locally but it fails with:
R CMD build . * checking for file ‘./DESCRIPTION’ ... OK * preparing ‘InteractionSet’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘interactions.Rmd’ using rmarkdown Quitting from lines 64-65 (interactions.Rmd) Error: processing vignette 'interactions.Rmd' failed with diagnostics: trying to generate an object from a virtual class ("DataFrame") --- failed re-building ‘interactions.Rmd’ SUMMARY: processing the following file failed: ‘interactions.Rmd’ Error: Vignette re-building failed. Execution halted
I faced the problem while trying to build the package on Linux ARM64, but as you can see below it fails the same way on Linux x86_64. The official build seems to be OK: https://bioconductor.org/checkResults/3.17/bioc-LATEST/InteractionSet/ Do I miss some step/prerequisite ? Please let me know if you need more information!
# include your problematic code here with any corresponding output # please also include the results of running the following in an R session R version 4.2.2 Patched (2022-11-10 r83330) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 22.04.1 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0 locale:  LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C  LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8  LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8  LC_PAPER=en_US.UTF-8 LC_NAME=C  LC_ADDRESS=C LC_TELEPHONE=C  LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages:  stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached):  compiler_4.2.2