DESeq2 in R 4.2.2
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Danielle • 0
@0ee98434
Last seen 10 hours ago
United States

I'm trying to reinstall DESeq2 with R 4.2.2. I used

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DESeq2")

When trying to load the library, I get


Loading required package: SummarizedExperiment
Error: package or namespace load failed for ‘SummarizedExperiment’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 there is no package called ‘DelayedArray’
Error: package ‘SummarizedExperiment’ could not be loaded

When trying to load DelayedArray using

Warning messages:
1: In install.packages(...) :
  installation of package ‘DelayedArray’ had non-zero exit status

Not sure how to proceed from here.

DESeq2 SummarizedExperiment DelayedArray • 47 views
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I would remove DESeq2, restart R and then reinstall. If that fails again please post the full log which somewhere will contain an error message to debug.

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