In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
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Last seen 4 months ago
Norway

Can someone clarify which is the exact matrix on which eigen decomposition is run in WGCNA to find the module eigengene?

Thanks again for the clarification!

WGCNA • 491 views
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cross-posted on r/bioinformatic:link

To calculate the module eigengenes with moduleEigengenes() will need the normalized expression data and the modules (colors). For more information check this link

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