Hi all,

I would like to understand inference step in Rnbeads and its use in differential analysis. I am not sure what these below options does in inference steps and how do we use these information in differential analysis step.

rnb.options(inference.max.cell.type.markers = 50000)
rnb.options(inference.top.cell.type.markers = 500)
rnb.options(inference.immune.cells = TRUE)

Many thanks, Yogesh