Samtools markdup in Rsamtools
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Learner • 0
@a923bf09
Last seen 17 months ago
Norway

I'd like to use Rsamtools to remove duplicate reads from a bam file. I'm looking for a solution similar to samtools markdup -r -s in.bam out.bam. Can anyone tell me how to do this in R, preferably with Rsamtools.

thanks

Rsamtools • 701 views
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For completeness, an initial answer on a GitHub issue on the same topic.

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