Create an Annotation DB file for a non-model organism
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@dd482574
Last seen 13 hours ago
Germany

Dear all,

I am slightly confused and I d like your help.

I want to use the Chipseeker package of Bioconductor.

It is required for using some functions to have an annotation DB file, as you see in the picture. The problem is that the genome is new, and the annotations are not published yet. I want to ask you if I can create a private annoDB file that only I can access. I have already created a TxDB file.

enter image description here

Thank you for your time

AnnotationDbi annotation ChIPseeker • 121 views
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@james-w-macdonald-5106
Last seen 7 hours ago
United States

You can make an OrgDb package using makeOrgPackage from the AnnotationForge package.

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