Error with FindConservedMarkers()
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Entering edit mode
Chris • 0
@3fdb6f97
Last seen 1 hour ago
United States

Hi all,

I try to run FindConservedMarkers() but I got this message:


markers_cluster_8 <- FindConservedMarkers(CV.harmony,
ident.1 = 8,
grouping.var = 'condition')

sessionInfo( )

Warning: Identity: 8 not present in group B. Skipping VVWarning: Identity: 8 not present in group A. Skipping NCError in marker.test[[i]] : subscript out of bounds.


This error appears in many clusters I chose. Would you have a suggestion? Thank you so much!

seurat • 162 views
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ATpoint ★ 2.4k
@atpoint-13662
Last seen 2 hours ago
Germany

Seurat is not a Bioconductor package, please browse their documentation, ask at biostars or open an issue at their GitHub if all that doesn't answer it.

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Entering edit mode

I asked on Biostars but haven't gotten help to fix this error. Thank you so much!