Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
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Prachi • 0
@1db8814d
Last seen 12 months ago
India

I want to map the Affymetrix probe IDs that I've obtained from NCBI GEO datasets, to gene symbols. How can I do it with the available packages for Affymetrix Human Clariom D Assay on Bioconductor?

Corresponding libraries has been called;

probeID = c("TC0400012173.hg.1", "TC0100016339.hg.1", "TC1000012516.hg.1"....)df = data.frame(Gene=unlist(mget(x = probeID, envir = clariomdhumantranscriptclusterSYMBOL)))




# Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : 
  value for "" not found
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db • 527 views
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@james-w-macdonald-5106
Last seen 1 hour ago
United States

Use the select function.

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