Recount3 data correspond to TCGA data
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kevin lee • 0
@f4af91be
Last seen 5 months ago
China

I can't Correspond the data of recount3 with the TCGA data.I use the bcr patient uuid to do this thing, but I can't find the whole id.I want to ask if it has other methods´╝čThank you for your answer.

recount3 • 291 views
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I want to add to this question, the recount3 repository uses other sampleIDs then TCGA. I know that before the IDs could be converted by using TCGAutils. However, GDC Legacy Archive has been retired and the archival data is no longer available. Causing the fact that UUIDtoBarcode(list_of_recount3_file_ids, from_type='file_id', legacy = T ) no longer works. I was wondering if there is another way to convert the recount3 sampleIDs to TCGA barcodes?

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