remving pseudogenes and lncRNA from deseq2 res
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@882813fa
Last seen 11 months ago
Australia

Hi I would like to exclude lncrna and pseuodogens from DEG results (using DESeq2). At what step do I do this? Thanks

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filter deseq2 • 620 views
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@mikelove
Last seen 10 hours ago
United States

This is up to you. You could do this at the beginning, before running DESeq().

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Thanks Michael. Can you share a code to do this please?

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I don't have any particular code on hand, I don't actually exclude these features. There are various source of annotation available within Bioconductor.

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