I am trying to use 'tximport' to create count matrix for counts produced by kallisto aligner.
After typing this:
txi.kallisto <- tximport(files, type = "kallisto", txOut = TRUE)
I got the error:
Error in H5Fopen(file, flags = flags, fapl = fapl, native = native) : HDF5. File accessibility. Unable to open file.
My R version is 4.2.3 so I install the 'Rhdf5lib' by:
I also tried install the 'rhdf5' and it was also the same problem.
I also tried this command
Sys.setenv(HDF5_USE_FILE_LOCKING = "FALSE") suggested by Mike but did not solve the problem.
I cannot get the sessionInfo:
> sessionInfo() Error in x$Priority : $ operator is invalid for atomic vectors In addition: Warning message: In FUN(X[[i]], ...) : DESCRIPTION file of package 'rhdf5' is missing or broken
Does anyone know how to solve the problem? Many thanks!