Hello, if you are able to help I would be so thankful!
I am using missMethyl to annotate my most significant DMPs of treatment response in a biomarker study. I have no significant DMPs but am continuing with this annotation anyway- this is part of the error message I am facing. I would still like to be able to see an object/table for toppaths (below), even if my top dmp/paths aren't significant. Is there any way I can do this?
Paths object is open in the right window and the console is on the left.
toppaths <-topGO(paths, paths$N, ontology = c("BP", "CC", "MF"), sort = NULL, number = 10L, truncate.term = NULL)
Error in if (p.value < 1) number <- min(number, sum(P <= p.value)) : the condition has length > 1