dmrseq and polymorphisms
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@3c15b83a
Last seen 10 months ago
Italy

Is there a way to keep in count of SNP polymorphisms that fall within the DMR in dmrseq ?

Many thanks, Giancarlo

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dmrseq • 419 views
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keegan ▴ 60
@keegan-11987
Last seen 6 months ago
Vancouver, BC, Canada

Hi Giancarlo,

There is no built-in functionality for this in dmrseq. However, if you have the coordinates of SNP polymorphisms identified form the data from an external tool, you could use GenomicRanges utilities to query which regions have overlap with these SNPs. Hope that helps!

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