I was trying to use msa package to make several mulitple alignement.
I was enjoying the function msaPrettyPrint() to generate nice pdfs.
I try this
msaPrettyPrint(myFirstAlignment, output="pdf", showNames="none", showLogo="none", askForOverwrite=FALSE, verbose=FALSE)
And there was a problem:
Error in texi2dvi(texfile, quiet = !verbose, pdf = identical(output, "pdf"), : unable to run 'pdflatex' on 'myFirstAlignment.tex' In addition: Warning message: running command '"pdflatex" -interaction=nonstopmode "myFirstAlignment.tex"' had status 1
Then i checked the "myFirstAlignment.tex" file with TexMaker ( i used latex before for writing papers) and then i noticed a mistake in one path :
So I simply test to correct the path to:
And then run the compilation and the pdf finally comes out!
How can I fix it in R without using texmaker? How I can specify where msaPrettyPrint writes the files?